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{{EZarticle-closed-auto‎}}[[Image:Proteus vulgaris.jpg|thumb|100 px|frame|''Proteus vulgaris'']]
{{subpages}}
{{Taxobox
| color = pink
| name =  ''Proteus vulgaris''
| image = Proteus vulgaris.jpg|thumb
| regnum = [[Bacteria]]
| phylum = [[Proteobacteria]]
| classis = [[Gamma Proteobacteria]]
| ordo =  [[Enterobacteriales]]
| familia = [[Enterobacteriaceae]]
| genus =  Proteus
| species = vulgaris
| binomial = ''Proteus vulgaris''
| binomial_authority = 
}}
'''''Proteus vulgaris''''' is a rod-shaped [[Gram-negative]] [[chemoheterotroph]] bacterium.  The size of individual cells varies from 0.4~0.6μm by 1.2~2.5μm. ''P. vulgaris'' possesses [[peritrichous flagella]], making it actively motile. It inhabits the soil, polluted water, raw meat, [[gastrointestinal]] tracts of animals, and dust. In humans, ''Proteus'' species most frequently cause [[urinary tract infections]], but can also produce severe abscesses; ''P. mirabilis'' produces 90 percent of cases, and is encountered in the community, but ''P. vulgaris'' is associated with [[nosocomial infection]] <ref>{{citation
| title = Proteus Infections: Overview
| author =  Struble K ''et al.'' | date =  2009 | journal = eMedicine
| url = http://emedicine.medscape.com/article/226434-overview}}</ref><ref>O'Hara CM ''et al.'' (2000) Classification, identification, and clinical significance of Proteus, Providencia, and Morganella ''Clin Microbiol Rev'' 13:534-46</ref>


==Classification==
==Isolation of organism==
 
With basic microbiological technique, samples believed to contain ''Proteus'' are first incubated on [[nutrient agar]] to form colonies.  To test the Gram-negative and [[oxidase-negative]] characteristics of ''Enterobacteriaceae'', [[Gram stain]]s and [[oxidase test]]s are performed. Candidae organisms are Gram and oxidase negative. The colonies of interest are then inoculated onto a selective culture medium, [[MacConkey agar]].<ref>{{citation
 
| title = MacConkey Agar Plates Protocols
===Higher order taxa===
  | publisher = American Society for Microbiology
 
| url  =http://www.microbelibrary.org/index.php/component/resource/laboratory-test/2855-macconkey-agar-plates-protocols }}</ref> Bile salts in the medium, as a normal part of the intestinal flora, suppress organisms that are not normally part of the home environment of ''Proteus''. McConkey agar contains [[lactose]], which ''Proteus'' does not ferment, allowing differentiation of organisms with different fermentation. ''Proteus'', an anaerobe, can be further differentiated by incubating the culture under anaerobic conditions.
Domain: ''Bacteria''<br/>
Phylum: ''Proteobacteria''<br/>
Class: ''Gamma Proteobacteria''<br/>
Order: ''Enterobacteriales'' <br/>
Family: ''Enterobacteriaceae''<br/>
 
===Species===
''P. vulgairs''
 
==Description and significance==
''P. vulgaris'' is rod-shaped gram-negative chemoheterotroph. It inhabits in gastrointestinal tracts of animal, soil, polluted water, raw meat, and dust.<br/>
''P.vulgaris'' is considered to be pathogenic bacteria.  In human, it can cause urinary tract infections, wound infections, and is a common cause of sinus and respiratory infections.
 
''Proteus'' can be isolated from a sample of soil.  Organism is inoculated in a nutrient agar to form colonies.  To test the gram-negative and oxidase-negative characteristics of ''Enterobacteriaceae'', gram stains and the oxidase test are performed.  The colonies of interest are then inoculated onto a selective and differential medium-McConkey agar.  McConkey agar is suitable for ''Proteus'' for two reasons. First reason is that the bile salt constituent allows the growth of ''Proteus'', which is a part of the intestinal flora, while selectively inhibits organisms that are not suitable to grow in interstinal environments. Second reason is that McConkey agar can differentiate the non lactose-fermenting characteristic of ''Proteus'' from the lactose-fermenting organisms. Since ''Proteus'' is an anaerobic organism, the plate agar can be incubated in an anaerobic jar.[http://www.cfkeep.org/html/stitch.php?s=15996728386727&id=79371591451924]
 
 
Describe the appearance, habitat, etc. of the organism, and why it is important enough to have its genome sequenced.  Describe how and where it was isolated.
Include a picture or two (with sources) if you can find them.


==Genome structure==
==Genome structure==
Describe the size and content of the genome. How many chromosomes?  Circular or linear?  Other interesting features?  What is known about its sequence?
Rts1 is a large conjugative [[plasmid]] isloated from ''Proteus vulgaris''.<ref>Murata T ''et al.'' (2010) Nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes ''J Bacteriol'' [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=135101 183:3194–202]</ref> The [[nucleotide]] sequencing of Rts1 was completed at Shinshu University School of Medicine, Japan. The [[genome]] has 217,182 base pairs and contains 300 [[open reading frames]]. The products of 141 of these showed significant sequence similarity to known proteins and among these, 99 were [[homologous]] to proteins whose functions are known or predicted. An interesting finding was the presence of ''tus''-like genes that could be involved in [[replication]] termination. <ref>Proteus vulgaris UR-75 plasmid Rts1 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=16389 complete sequence]</ref>
Does it have any plasmids?  Are they important to the organism's lifestyle?
 
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=16389


==Cell structure and metabolism==
==Cell structure and metabolism==
''Proteus'' species have an [[extracytoplasmic]] outer membrane.  The outer membrane contains a [[lipid]] bilayer, [[lipoproteins]], [[polysaccharides]], and [[lipopolysaccharides]].  No [[spores]] or [[capsules]] are formed. 


Proteus species possess an extracytoplasmic outer membrane, a feature shared with other gram-negative bacteria. In addition, the outer membrane contains a lipid bilayer, lipoproteins, polysaccharides, and lipopolysaccharides.  
''P. vulgaris'' obtains energy and electrons from organic molecules.  It ferments [[glucose]], [[sucrose]], [[galactose]], [[glycerol]] and occasionally [[maltose]] with gas production, but never [[lactose]]; it liquefies [[gelatin]], [[casein]], and blood [[serum]], curdling milk with acid production.  It is not limited to any specific temperature range, but good growth occurs at 20° and 30°, while growth is poor at 37°.
 


''P. vulgaris'' has two interesting features.  The cells are highly motile and swarm across the surface of the [[agar]] plates, forming a very thin film of bacteria.  When the cells stop and undergo a cycle of growth and division, the swarming periods are interspersed with periods and the colony has a distinct zonation. The other feature is that ''P. vulgaris'' can produce [[urease]] and degrade [[urea]] to [[ammonia]].  By alkalinizing the urine, ''P. vulgaris'' makes the environment more suitable for its survival.


==Ecology==
''P. vulgaris'' is said to be present in all sewage, a constant source of contamination, which is a favorable medium for growth.


Where ''P. mirabilis'' infection tends to be community-acquired, ''P. vulgaris'' is more prone to cause [[nosocomial]] infections. To prevent transmission of nosocomial pathogens within hospitals, the persistence of nosocomial pathogens on surfaces was assessed.  The longer a nosocomial pathogen remains on a surface, the longer it may be a source of transmission and thus there is higher chance of getting exposed to a susceptible patient or hospital personnel.  The result showed that ''P. vulgaris'' survived 1-2 days.


Describe any interesting features and/or cell structures; how it gains energy; what important molecules it produces.
To reduce the risk of transmission of nosocomial pathogens from inanimate surfaces to susceptible patients, disinfection of surfaces in specific patient-care areas is recommended.<ref>{{citation
| journal = BMC Infect Dis | year = 2006 | volume = 6 | page = 130.
| doi=  10.1186/1471-2334-6-130.
| title = How long do nosocomial pathogens persist on inanimate surfaces? A systematic review
| author = Kramer A ''et al.'' | url = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1564025/}}</ref>


==Ecology==
==Pathology==  
Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc.
[[Image:Multiple_rod-shaped_bacteria_between_white_blood_cells_of_patient_with_urinary_tract_infection.jpg|thumb|400 px|Multiple rod-shaped bacteria between white blood cells of patient with urinary tract infection. <small>Credit: Steven Fruitsmaak</small>]]
''P. vulgaris'' and ''P. mirabilis'' are two common species of  ''Proteus'' associated with human infection. One of the virulence factors identified is that they contain [[fimbriae]].
<ref>Rozalski A ''et al.'' ( ) Potential virulence factors of Proteus bacilli ''Microbiol Mol Biol Rev'' 61:65-89</ref> Specific chemicals on the tip of [[pili]] enable organism to attach to selected site.  Due to presence of peritrichouse flagella, ''Proteus'' is very motile. The most common infections caused by this genus are [[urinary tract infection]] and wound infection. ''P. mirabilis'' is a major agent in UTI.  ''Proteus'' is abundant in urease production. Urease splits urea into carbon dioxide (CO<sub>2</sub>) and ammonia (NH<sub>3</sub>). Ammonia causes the urine to become very [[alkaline]] (pH >7), and may cause the formation of [[renal stones]]. Some of the symptoms of ''Proteus'' infection include flank pain, hematuria, and persistent alkaline urine.  


==Pathology==
In animals, some [[strains]] of ''Proteus'' can be harmful while others are not. ''Proteus'' isolated from the vomit of patients with meat-poison caused diarrhea and death when fed to mice. When different cultured ''Proteus'' was fed to mice, neither sickness nor immunity was present. When ''P. vulgaris'' was injected into the [[peritoneal]] cavity of guinea pig, it caused a rapid death. However, when the same amount was injected into the subcutis, an extensive [[necrosis]] resulted. [[Intravenous]] injection in cats caused severe vomiting, bloody diarrhea, and death.
How does this organism cause disease? Human, animal, plant hosts?  Virulence factors, as well as patient symptoms.


===Antibiotic therapy===
''Proteus'' species are highly resistant to antibiotics, so infections can be difficult to cure.  Their plasmids are responsible for spreading antibiotics resistance genes in a microbial population.  Many ''Proteus'' species have varied [[multi-drug resistant]] markers that are encoded on transferable plasmids.  The resistant plasmids can be transferred with a frequency ranging from 2x10<sup>-4</sup> to 4x10<sup>-2</sup> per donor cells. Therefore, the antibiotics-resistant plasmids markers can be easily transferred by [[conjugation]]. However, most of the plasmid markers are not transferable, reflecting the characteristic of antibiotic resistance. 


''Proteus vulgaris'' is least resistant to [[ciprofloxacin]] and [[cefotaxime]] but when it is introduced to these drugs, higher doses than "normal" should be used.<ref>
Yah SC ''et al.'' (2007) Widespread plasmid resistance genes among Proteus species in diabetic wounds of patients in the Ahmadu Bello university teaching hospital (ABUTH) Zaria ''Afr J Biotechnol'' [http://www.bioline.org.br/request?jb07306 6:1757-62]</ref>


==Current Research==
===Action of Lysozyme on Penicillin-Induced Filaments of ''P. vulgaris''===
Low doses of [[penicillin]] causes gram-negative bacteria to transform into [[filaments]], but penicillin itself does no harm to [[cell envelopes]] and [[cell wall]].  The hen egg white [[lysozyme]], which does not affect normal cells of ''P. vulgaris'' P 18, modifies the envelope of filaments.<ref>Fleck J ''et al.'' Action of lysozyme on penicillin-induced filaments of ''Proteus vulgaris'' ''J Bacteriol'' [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=245859  120:929–33]</ref>


Enter summaries of the most recent research here--at least three required
Low-dose of penicillin stopped cell septation in ''P. vulgaris'' P 18 and caused its transformation into filaments without changing the structure of cell envelope.  In the penicillin-induced filaments, lysozyme penetrated the cell envelope and dissolved the inner most layer of the cell wall. The action of penicillin caused removal of the barrier to this [[enzyme]]. As a result, the five-layered wall is reduced to three-layered structure.  This three-layered structure contained the outer membrane and the filament was transformed into [[spheroplasts]].


==References==
==References==
[Sample reference] [http://ijs.sgmjournals.org/cgi/reprint/50/2/489 Takai, K., Sugai, A., Itoh, T., and Horikoshi, K. "''Palaeococcus ferrophilus'' gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney". ''International Journal of Systematic and Evolutionary Microbiology''. 2000. Volume 50. p. 489-500.]
{{reflist|2}}
 
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Proteus vulgaris
Proteus vulgaris.jpg
Scientific classification
Kingdom: Bacteria
Phylum: Proteobacteria
Class: Gamma Proteobacteria
Order: Enterobacteriales
Family: Enterobacteriaceae
Genus: Proteus
Species: vulgaris
Binomial name
Proteus vulgaris

Proteus vulgaris is a rod-shaped Gram-negative chemoheterotroph bacterium. The size of individual cells varies from 0.4~0.6μm by 1.2~2.5μm. P. vulgaris possesses peritrichous flagella, making it actively motile. It inhabits the soil, polluted water, raw meat, gastrointestinal tracts of animals, and dust. In humans, Proteus species most frequently cause urinary tract infections, but can also produce severe abscesses; P. mirabilis produces 90 percent of cases, and is encountered in the community, but P. vulgaris is associated with nosocomial infection [1][2]

Isolation of organism

With basic microbiological technique, samples believed to contain Proteus are first incubated on nutrient agar to form colonies. To test the Gram-negative and oxidase-negative characteristics of Enterobacteriaceae, Gram stains and oxidase tests are performed. Candidae organisms are Gram and oxidase negative. The colonies of interest are then inoculated onto a selective culture medium, MacConkey agar.[3] Bile salts in the medium, as a normal part of the intestinal flora, suppress organisms that are not normally part of the home environment of Proteus. McConkey agar contains lactose, which Proteus does not ferment, allowing differentiation of organisms with different fermentation. Proteus, an anaerobe, can be further differentiated by incubating the culture under anaerobic conditions.

Genome structure

Rts1 is a large conjugative plasmid isloated from Proteus vulgaris.[4] The nucleotide sequencing of Rts1 was completed at Shinshu University School of Medicine, Japan. The genome has 217,182 base pairs and contains 300 open reading frames. The products of 141 of these showed significant sequence similarity to known proteins and among these, 99 were homologous to proteins whose functions are known or predicted. An interesting finding was the presence of tus-like genes that could be involved in replication termination. [5]

Cell structure and metabolism

Proteus species have an extracytoplasmic outer membrane. The outer membrane contains a lipid bilayer, lipoproteins, polysaccharides, and lipopolysaccharides. No spores or capsules are formed.

P. vulgaris obtains energy and electrons from organic molecules. It ferments glucose, sucrose, galactose, glycerol and occasionally maltose with gas production, but never lactose; it liquefies gelatin, casein, and blood serum, curdling milk with acid production. It is not limited to any specific temperature range, but good growth occurs at 20° and 30°, while growth is poor at 37°.

P. vulgaris has two interesting features. The cells are highly motile and swarm across the surface of the agar plates, forming a very thin film of bacteria. When the cells stop and undergo a cycle of growth and division, the swarming periods are interspersed with periods and the colony has a distinct zonation. The other feature is that P. vulgaris can produce urease and degrade urea to ammonia. By alkalinizing the urine, P. vulgaris makes the environment more suitable for its survival.

Ecology

P. vulgaris is said to be present in all sewage, a constant source of contamination, which is a favorable medium for growth.

Where P. mirabilis infection tends to be community-acquired, P. vulgaris is more prone to cause nosocomial infections. To prevent transmission of nosocomial pathogens within hospitals, the persistence of nosocomial pathogens on surfaces was assessed. The longer a nosocomial pathogen remains on a surface, the longer it may be a source of transmission and thus there is higher chance of getting exposed to a susceptible patient or hospital personnel. The result showed that P. vulgaris survived 1-2 days.

To reduce the risk of transmission of nosocomial pathogens from inanimate surfaces to susceptible patients, disinfection of surfaces in specific patient-care areas is recommended.[6]

Pathology

Multiple rod-shaped bacteria between white blood cells of patient with urinary tract infection. Credit: Steven Fruitsmaak

P. vulgaris and P. mirabilis are two common species of Proteus associated with human infection. One of the virulence factors identified is that they contain fimbriae. [7] Specific chemicals on the tip of pili enable organism to attach to selected site. Due to presence of peritrichouse flagella, Proteus is very motile. The most common infections caused by this genus are urinary tract infection and wound infection. P. mirabilis is a major agent in UTI. Proteus is abundant in urease production. Urease splits urea into carbon dioxide (CO2) and ammonia (NH3). Ammonia causes the urine to become very alkaline (pH >7), and may cause the formation of renal stones. Some of the symptoms of Proteus infection include flank pain, hematuria, and persistent alkaline urine.

In animals, some strains of Proteus can be harmful while others are not. Proteus isolated from the vomit of patients with meat-poison caused diarrhea and death when fed to mice. When different cultured Proteus was fed to mice, neither sickness nor immunity was present. When P. vulgaris was injected into the peritoneal cavity of guinea pig, it caused a rapid death. However, when the same amount was injected into the subcutis, an extensive necrosis resulted. Intravenous injection in cats caused severe vomiting, bloody diarrhea, and death.

Antibiotic therapy

Proteus species are highly resistant to antibiotics, so infections can be difficult to cure. Their plasmids are responsible for spreading antibiotics resistance genes in a microbial population. Many Proteus species have varied multi-drug resistant markers that are encoded on transferable plasmids. The resistant plasmids can be transferred with a frequency ranging from 2x10-4 to 4x10-2 per donor cells. Therefore, the antibiotics-resistant plasmids markers can be easily transferred by conjugation. However, most of the plasmid markers are not transferable, reflecting the characteristic of antibiotic resistance.

Proteus vulgaris is least resistant to ciprofloxacin and cefotaxime but when it is introduced to these drugs, higher doses than "normal" should be used.[8]

Action of Lysozyme on Penicillin-Induced Filaments of P. vulgaris

Low doses of penicillin causes gram-negative bacteria to transform into filaments, but penicillin itself does no harm to cell envelopes and cell wall. The hen egg white lysozyme, which does not affect normal cells of P. vulgaris P 18, modifies the envelope of filaments.[9]

Low-dose of penicillin stopped cell septation in P. vulgaris P 18 and caused its transformation into filaments without changing the structure of cell envelope. In the penicillin-induced filaments, lysozyme penetrated the cell envelope and dissolved the inner most layer of the cell wall. The action of penicillin caused removal of the barrier to this enzyme. As a result, the five-layered wall is reduced to three-layered structure. This three-layered structure contained the outer membrane and the filament was transformed into spheroplasts.

References

  1. Struble K et al. (2009), "Proteus Infections: Overview", eMedicine
  2. O'Hara CM et al. (2000) Classification, identification, and clinical significance of Proteus, Providencia, and Morganella Clin Microbiol Rev 13:534-46
  3. MacConkey Agar Plates Protocols, American Society for Microbiology
  4. Murata T et al. (2010) Nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes J Bacteriol 183:3194–202
  5. Proteus vulgaris UR-75 plasmid Rts1 complete sequence
  6. Kramer A et al. (2006), "How long do nosocomial pathogens persist on inanimate surfaces? A systematic review", BMC Infect Dis 6: 130., DOI:10.1186/1471-2334-6-130.
  7. Rozalski A et al. ( ) Potential virulence factors of Proteus bacilli Microbiol Mol Biol Rev 61:65-89
  8. Yah SC et al. (2007) Widespread plasmid resistance genes among Proteus species in diabetic wounds of patients in the Ahmadu Bello university teaching hospital (ABUTH) Zaria Afr J Biotechnol 6:1757-62
  9. Fleck J et al. Action of lysozyme on penicillin-induced filaments of Proteus vulgaris J Bacteriol 120:929–33