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'''Fossilization''' is the process which creates a fossil. The word ‘fossil’ is derived from the Latin fossilis, something dug up.<ref name="MacRae">MacRae, C.S. 1999. ''Life Etched in Stone: Fossils of South Africa''. The Geological Society of South Africa, Johannesburg.</ref>
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During the Middle Ages, the term ‘fossil’ was used for any sample recovered from the Earth, including rocks and minerals.<ref name="MacRae">.</ref>
{{dambigbox|the process in [[palaeontology]]|Fossilization}}
Today, fossils are recognised as a record of ancient life. They can be actual remnants of an organism, or evidence of their behaviour.<ref name="MacRae">.</ref>
'''Fossilization''' is the process that preserves evidence of life in earth's rock record. This evidence of past life is called a [[fossil]]. The word "fossil" is derived from the Latin ''fossilis'', something dug up.<ref name="MacRae">MacRae, C.S. 1999. ''Life Etched in Stone: Fossils of South Africa''. The Geological Society of South Africa, Johannesburg.</ref>
During the [[Middle Ages]], the term "fossil" was used for any sample recovered from the earth, including [[Rock (geology)|rocks]] and [[mineral]]s.<ref name="MacRae"/> Today, the use of "fossil" is limited to the record of ancient [[life]]. Fossilization can preserve actual remnants of an organism, or evidence of their presence in an ecosystem.<ref name="MacRae"/>
{{Image|Mesosaurus - McCarthy & Rubidge.jpg|left|400px|Fossil of ''Mesosaurus tenuidens'', a swimming reptile from the Whitehill Formation near Kimberley, South Africa.}}


Understanding the process of fossilization, and the different means through which it can occur, is used by [[Taphonomy|taphonomists]], [[Paleontology|paleontologists]], and [[Geology|geologists]] to understand the lives of past organisms and the ancient environments in which they lived. The fossil record, however, is not a representative sample of past life, because certain organisms, and particular elements of those organisms, are more likely to be preserved than others.  In addition certain environments are more suitable for fossilization than others, and some environments will yield no fossil remains through time.
[[Taphonomy]] is the study of what has happened to an organism from the moment of death until it is found as a fossil.<ref name="Shipman"/> Exploring the process of fossilization from a taphonomic perspective allows placement of individual fossils into a wider context. Consequently, researchers reconstruct not only the morphology of organisms, but under the right conditions, their behavior, life history and palaeoenvironment as well.
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== Overview ==
== Overview ==
Fossilization is not a process that only occurred millions of years ago. It has also occurred in the recent past, simply because the same geological processes that happened in the past are also taking place now. This is called the Principle of Uniformitarianism.<ref name="McCarthy & Rubidge">McCarthy, T. & Rubidge, B. 2005. ''The Story of Earth and Life: A southern African perspective on a 4.6-billion-year journey''. Struik Publishers, Cape Town.</ref>
Organisms pass through a number of stages on their way to becoming fossils.<ref name="Brett & Baird">Brett, C.E. & Baird, G.C. 1986. Comparative Taphonomy: A Key to Paleoenvironmental Interpretation Based on Fossil Preservation. ''PALAIOS'' '''1'''(3): 207-227.</ref>
Anna Behrensmeyer reported bones in all stages of fossilization, from organic to completely mineralised, in the Amboseli Basin of East Africa.<ref name="Behrensmeyer et al.">Behrensmeyer, A.K. 1991. Vertebrate Paleoecology in a Recent East African Ecosystem. In: Gray, J., Boucot, A.J. & Berry, W.B.N. (eds.), ''Communities of the Past'', Stroudsburg: Hutchinson Ross Publishing Co.</ref>
 
Bones are dated from the Holocene to the Pleistocene, negating the claim made by some that no instances of fossilization are apparent today.  
<table class="wikitable">
<tr><th>Stage</th><th>Definition
<tr><td> Death </td><td>Generally, this is the first stage in fossilization. Death can occur as a result of burial and in this case biostratinomic processes may not take place.</td>
<tr><td> Biostratinomic processes </td><td> Processes such as reorientation, disarticulation, fragmentation, and corrosion, which modify the remains. Not desirable, as information is lost.</td>
<tr><td> Deposition </td><td> Burial of the remains in sediment, where they are less likely to be disturbed.</td>
<tr><td> Diagenetic processes </td><td> Chemical / physical changes e.g. permineralization. Necessary for fossilization.</td>
</table>
 
First, the organism must be deposited in sediment. Between the time of death and burial, [[Biostratinomy|biostratinomic]] processes alter the remains. Before burial, an organic skeleton is normally subject to reorientation, disarticulation, fragmentation, and corrosion. Once it is buried, it undergoes diagenetic processes. [[Diagenesis]] is simply any change, chemical or physical, which occurs in an organism after burial.<ref name="Brett & Baird"/> Such changes are necessary for preservation, because organic matter will not survive for long before it is decomposed, and even hard parts, as bones, teeth, calcified shells, are normally prone to destruction. A typical diagenetic process is mineralization, which can occur with various minerals such as pyrite, phosphates or the various forms of [[silica]].<ref name="Brett & Baird"/>
 
Fossilization is not a process that only occurred millions of years ago. It has also occurred in the recent past, simply because the same geological processes that happened in the past are also taking place now. This is called the [[Principle of Uniformitarianism]].<ref name="McCarthy & Rubidge">McCarthy, T. & Rubidge, B. 2005. ''The Story of Earth and Life: A southern African perspective on a 4.6-billion-year journey''. Struik Publishers, Cape Town.</ref> For example, Anna Behrensmeyer reported bones in all stages of fossilization, from organic to completely mineralized, in the Amboseli Basin of East Africa.<ref name="Behrensmeyer et al.">Behrensmeyer, A.K. 1991. Vertebrate Paleoecology in a Recent East African Ecosystem. In: Gray, J., Boucot, A.J. & Berry, W.B.N. (eds.), ''Communities of the Past'', Stroudsburg: Hutchinson Ross Publishing Co.</ref> Bones are dated from the [[Holocene]] to the [[Pleistocene]], negating the claim made by some that no instances of fossilization are apparent today.  
{{Image|Sub-fossil bird nest - MacRae.jpg|left|200px|Fossilized bird nest from a Cape Town wetland. Because it was only fossilized recently, it is termed a "sub-fossil".}}


“Post-mortem modification is a virtually unavoidable fact of fossilization”.<ref name="Allison & Briggs">Allison, P.A. & Briggs, D.E.G. 1991. ''Taphonomy: Releasing the Data Locked in the Fossil Record''. Plenum Press, New York.</ref> Older fossils are more likely to have been modified by diagenetic processes, and thus, to be a less accurate copy of the original.<ref name="Allison & Briggs"/> Analysis of modes of fossilization in an assemblage can reveal whether that assemblage represents input from more than one source.<ref name="Henderson et al">Henderson, P., Pickford, M. & Williams, C.T. 1987. A geochemical study of rocks and spring waters at Kanam and Kanjera, Kenya, and the implications concerning element mobility and uptake. ''Journal of African Earth Sciences'' '''6''': 221-227.</ref>


“Post-mortem modification is a virtually unavoidable fact of fossilization”.<ref name="Allison & Briggs">Allison, P.A. & Briggs, D.E.G. 1991. ''Taphonomy: Releasing the Data Locked in the Fossil Record''. Plenum Press, New York.</ref>
== Fossilization of organic tissues ==
Older fossils are more likely to have been modified by diagenetic processes, and thus, to be a less accurate copy of the original.<ref name="Allison & Briggs">.</ref>
There are five general types of fossilization:<ref name="Allison & Briggs"/>
Analysis of modes of fossilization in an assemblage can reveal whether that assemblage represents input from more than one source.<ref name="Henderson et al"> Henderson, P., Pickford, M. & Williams, C.T. 1987. A geochemical study of rocks and spring waters at Kanam and Kanjera, Kenya, and the implications concerning element mobility and uptake. ‘’Journal of African Earth Sciences’’ ‘’’6’’’: 221-227.</ref>
* carbonized soft tissue
* diagenetically mineralized three-dimensional tissue
* tissue outlines
* carbonized refractory tissue
* originally mineralized tissue, i.e., shell and bone.


''Carbonization'' is a process occurring within the sediment in the absence of oxygen. In such conditions, anaerobic bacteria consume hydrogen and oxygen, therefore concentrating carbon. As long as the sediment or rock is kept in anoxic environments, the carbon, which is residual organic tissue, is preserved, but carbonized soft tissue is only preserved as a thin film. The final products of carbonization are [[coal]] and [[hydrocarbon]]s, which can be considered accumulations of very badly preserved fossils.


''Permineralization'' and ''petrification'' are processes leading to the preservation of tissues in three [[dimension]]s. They are common, for example, in [[bone]]s which have a high porosity and are filled with marrow. If bones become buried when an animal dies, ground water can permeate. Carbonate minerals such as [[calcite]], or silica, precipitate out of solution and solidify the organic material, accurately preserving the internal cellular structure. This is the process of permineralization, and has occurred in most older fossils.<ref name="MacRae"/> In permineralization, the cell pores are packed with minerals, while the walls remain highly organic.<ref name="Allison & Briggs"/> Replacement happens when minerals replace the organic matter completely. The mineral replacement of shell or bone is also called ''petrification'', because it turns organic material into stone.<ref name="McCarthy & Rubidge"/> When a fossil is petrified, both the cell walls and voids are mineralized.<ref name="Allison & Briggs"/> Another example of petrification is silicified wood. Around 20 different minerals have been found to replace fossils. Chalcedony, pyrite and iron oxide are common in replacement.<ref name="MacRae"/>


== Styles of fossilization ==
An organism can leave a ''mold'' behind when it decays, preserving surface details in the surrounding sediment. If the mold later fills with sediment, a replica of the organism is created, called a ''natural cast''. A natural cast does not preserve the internal or cellular structure of the original organism, but only its surface detail.<ref name="MacRae"/>
There are five general types of fossilization: carbonised soft tissue, diagenetically mineralised three-dimensional tissue, tissue outlines, carbonised refractory tissue, and originally mineralised tissue i.e. shell and bone.<ref name="Allison & Briggs">.</ref>
The term cast is also used to indicate three-dimensional copies of a fossil, made out of plaster and resin. These casts are useful for teaching purposes, or when the original fossil is fragile or damaged. However, these laboratory casts are created in a similar way to a natural cast, by using a mold. The endocranial cast of the Taung child was formed naturally by the accumulation of lime inside the skull, and preseves the sutures of the brain on its surface.
The mineral replacement of shell or bone is called petrification, because it turns organic material into stone.<ref name="McCarthy & Rubidge">.</ref>
[[Image:Taung child cast - McCarthy & Rubidge.jpg|right|thumb|200px|{{#ifexist:Template:Taung child cast - McCarthy & Rubidge.jpg/credit|{{Taung child cast - McCarthy & Rubidge.jpg/credit}}<br/>|}}Partial skull and endocranial cast of the [[Taung Child]], holotype of Australopithecus africanus.]]
An organism can leave a mould behind when it decays, preserving surface detail in the surrounding sediment. If the mould later fills with sediment, an external replica of the organism is created called a cast. A cast does not preserve the internal structure of the original organism.<ref name="MacRae">.</ref>
Trace fossils are not remnants of an organism itself, but some record of its behaviour. Tracks, burrows, coprolites (fossil faeces), and stone tools are all examples of trace fossils.  


''Carbonized refractory tissue'' is, e.g., [[charcoal]].


Bones have a high porosity and are filled with marrow. If bones become buried when an animal dies, ground water can permeate. Minerals such as calcium carbonate and silica precipitate out of solution and solidify the organic material, accurately preserving the internal cellular structure. This is called permineralization, and has occurred in most older fossils.<ref name="MacRae">.</ref>
Finally, some hard tissues, as bone or shell, may resist diagenesis and preserve substantially unmodified. This is relatively common for [[Quaternary]] fossils, but becomes an exceptionally rare instance for [[Tertiary]] or older fossils.  
In permineralization, the cell pores are packed with minerals, while the walls remain highly organic.<ref name="Allison & Briggs">.</ref>
Replacement happens when minerals replace the organic matter completely. When a fossil is petrified, both the cell walls and voids are mineralised.<ref name="Allison & Briggs">.</ref>
Around 20 different minerals have been found to replace fossils. Chalcedony, pyrite and iron oxide are common in replacement.<ref name="MacRae">.</ref>


''Trace fossils'' are not remnants of an organism itself, but some record of its behaviour. Tracks, burrows, coprolites (fossil feces), and [[stone tools]] are all examples of trace fossils. The study of fossil traces is a special branch of [[paleontology]], called [[ichnology]].


== Conditions for preservation ==
== Conditions for preservation ==
Fossils represent a very small proportion of all the organisms which have ever lived. This is because fossils only form under specific conditions. Decomposition is a requirement for environments to function, and so fossilization represents a deviation from this natural process.<ref name="MacRae">.</ref>
Fossils represent a very small proportion of all the organisms which have ever lived. This is because fossils only form under specific conditions. [[Decomposition]] is a requirement for environments to function, and so fossilization represents a deviation from this natural process.<ref name="MacRae"/>
Destructive agents which aid decomposition include predators and scavengers, transport by wind and water, weathering by changes in temperature, wind, rain and chemicals, and decay by insects and roots.<ref name="Shipman">.<Shipman, P. 1981. ‘’Life History of a Fossil: An Introduction to Taphonomy and Paleoecology’’. Harvard University Press, England.</ref>
Various agents can be responsible for the preservation of organisms. Commonly, sediments bury the remains and keep them from being disturbed during the process of fossilization. More unusual agents include lava or volcanic ash, and severe cold or aridity.<ref name="Shipman">.</ref>
Temperatures below 4°C inhibit bacterial activity and thus, decay of dead matter.<ref name="Allison & Briggs">.</ref>
Generally, the following circumstances are favourable for fossilization. The organism should be rapidly buried to avoid damage by scavengers or weathering agents like water, wind and fluctuations in temperatures.<ref name="McCarthy & Rubidge">.</ref>
Fossils are most common in fluvial sediments, and rare in soils.<ref name="Shipman">.</ref>
The remains require little or no disturbance during the fossilization process.


Destructive agents which aid decomposition include predators and scavengers, transport by wind and water, weathering by changes in temperature, wind, rain and chemicals, and decay by microbes, [[insect]]s and roots.<ref name="Shipman">Shipman, P. 1981. ''Life History of a Fossil: An Introduction to Taphonomy and Paleoecology''. Harvard University Press, England.</ref> Various agents can be responsible for the preservation of organisms. Commonly, sediments bury the remains and keep them from being disturbed during the process of fossilization. More unusual agents include lava or volcanic ash, and severe cold or aridity.<ref name="Shipman"/> Temperatures below 4°C (39.2ºF) inhibit bacterial activity and thus, decay of organic matter.<ref name="Allison & Briggs"/>


The organism should be buried in anaerobic conditions, because oxygen encourages the presence of bacteria which decompose organic material.<ref name="McCarthy & Rubidge">.</ref>
Generally, the following circumstances are favorable for fossilization:
Examples of anaerobic environments include wet areas like swamps and floodplains. However, decay can occur under anoxic conditions, for example by bacterial sulfate reduction.<ref name="Allison">.< Allison, P.A. 1988. Konservat-Lagerstätten: cause and classification. ‘’Paleobiology’’ ‘’’14’’’: 331-334.</ref>
* The organism should be rapidly buried to avoid damage by scavengers or weathering agents like water, wind and fluctuations in temperatures.<ref name="McCarthy & Rubidge"/> Thus, fossilization is much more common in marine environments, which are characterized preferentially by sediment deposition rather than erosion. In continental environments, fossils are most common in fluvial sediments, and rare in soils.<ref name="Shipman"/> The remains require little or no disturbance during the fossilization process.
Anoxia also creates reducing conditions, forming reactive ionic species. This encourages mineral precipitation.<ref name="Allison">.</ref>
* The organism should be buried in anaerobic conditions, because oxygen encourages the presence of bacteria which decompose organic material.<ref name="McCarthy & Rubidge"/> Examples of continental anaerobic environments include wet areas like swamps and floodplains. However, decay can occur under anoxic conditions, for example by bacterial sulfate reduction.<ref name="Allison">Allison, P.A. 1988. Konservat-Lagerstätten: cause and classification. ''Paleobiology'' '''14''': 331-334.</ref> Anoxia also creates reducing conditions, forming reactive ionic species. This encourages mineral precipitation.<ref name="Allison"/>
Containing some hard parts increases the likelihood that an organism will be preserved, but it is not necessary for fossilization.<ref name="Martin">.< Martin, R.E. 1999. ‘’Taphonomy: A Process Approach’’. Cambridge University Press.</ref>
* Containing some hard parts increases the likelihood that an organism will be preserved, but it is not necessary for fossilization.<ref name="Martin">Martin, R.E. 1999. ''Taphonomy: A Process Approach''. Cambridge University Press.</ref> Although multicellular life was already diversifying well before the [[Cambrian (geology)|Cambrian]] period, an extensive record of pre-Cambrian life forms does not exist.<ref name="McCarthy & Rubidge"/> It was only during the [[Cambrian Explosion]] of life that many forms began simultaneously covering themselves with a hard exterior. This hard surface developed as protection against predation, but also happened to be conducive to fossilization.<ref name="McCarthy & Rubidge"/>
Although multicellular life was already diversifying well before the Cambrian period, we do not have an extensive record of these pre-Cambrian life forms.<ref name="McCarthy & Rubidge">.</ref>
{{Image|Archaeopteryx - McCarthy & Rubidge.jpg|left|250px|''Archaeopteryx'' is a small and gracile forest animal, with a lower likelihood of preservation.}}
It was only during the Cambrian Explosion of life that many forms began simultaneously covering themselves with a hard exterior. This hard surface developed as protection against predation, but also happened to be conducive to fossilization.<ref name="McCarthy & Rubidge">.</ref>
Because of the specific conditions needed for a fossil to be created, organisms that do not live in environments favourable to preservation are likely never to appear in the fossil record. High-energy environments have high rates of erosion and low rates of sedimentation, which would not allow for organisms to be buried rapidly, and lie undisturbed.<ref name="MacRae">.</ref>
Small, gracile animals are normally too delicate to withstand the ravages of time, as are animals living in a high-acidic environment like a tropical forest.<ref name="DiSilvestro">.< DiSilvestro, D.L. 1997. In Quest of the Origin of Birds. ‘’BioScience’’ ‘’’47’’’(8): 481-485.</ref>
Some kinds of organisms have been preserved as fossils, but are not readily available for study. Deep marine environments accumulate sediment and would bury marine plants and animals, but most of these fossils are still submerged in ocean depths.<ref name="MacRae">.</ref>


Because of the specific conditions needed for a fossil to be created, organisms that do not live in environments favorable to preservation are likely never to appear in the fossil record. Small, gracile animals are normally too delicate to withstand the ravages of time, as are animals living in a high-acidic environment like a tropical forest.<ref name="DiSilvestro">DiSilvestro, D.L. 1997. In Quest of the Origin of Birds. ''BioScience'' '''47'''(8): 481-485.</ref> Most depositional environments are marine, while terrestrial environments tend to be erosional. Thus, a much better fossil record exists for marine organisms than for terrestrial life.<ref name="MacRae"/>


== Diagenetic processes ==
== Diagenetic processes ==
=== Silification ===
=== Silification ===
Silica in the form of quartz is extremely stable at the Earth’s surface, therefore silicified fossils are likely to withstand modification or damage .<ref name="Allison & Briggs">.</ref>
[[Silica]], and especially its most common crystallized form (the mineral [[quartz]]), is extremely stable at the Earth’s surface, therefore silicified fossils are likely to withstand modification or damage.<ref name="Allison & Briggs"/> Silification occurs mainly in plants, while in soft organisms it is very rare.<ref name="Allison"/> When plant matter is silicified, this is an example of permineralization and not replacement.<ref name="Leo">Leo, R.F. & Barghoon, E.S. 1976. Silification of wood. ''Bot. Mus. Leaflets Harv. Univ.''' '''25''': 1-47.</ref> There are four variations on silification replacement: mosaic quartz, spherulitic chalcedony, lutecite and microgranular quartz.<ref name="Allison & Briggs"/> Leo & Barghoon proposed that partial decay is necessary for silification, although it may be only on the molecular level.<ref name="Leo"/>  
Silification occurs mainly in plants, whilst in soft organisms it is very rare.<ref name="Allison">.</ref>
{{Image|Fossil wood Auracaryoxylon sp. - MacRae.jpg|right|250px|Permineralization of fossil wood ''Auracaryoxylon'' sp., with internal cellular structure preserved. This is as a result of silica entering the cell voids.}}
When plant matter is silicified, this is an example of permineralization and not replacement.<ref name="Leo">.< Leo, R.F. & Barghoon, E.S. 1976. Silification of wood. ‘’Bot. Mus. Leaflets Harv. Univ.’’ ‘’’25’’’: 1-47.</ref>
There are four variations on silification replacement: mosaic quartz, spherulitic chalcedony, lutecite and microgranular quartz.<ref name="Allison & Briggs">.</ref>
Leo & Barghoon .<ref name="Leo">.</ref> proposed that partial decay is necessary for silification, although it may be only on the molecular level.  
 
 
=== Phosphatization<ref name="Allison">.</ref> ===
Phosphatization of soft parts have an unsurpassed degree of preservation, with detailed cellular structure. Muscle fibres are most often preserved through phosphate replacement. Normally carbonate ion concentrations are higher than phosphates in both fresh and marine waters, and so carbonate replacement is preferred. For phosphatization to occur, organic content of the water must be high, coupled with a low rate of burial.


=== Phosphatization===
Phosphatization <ref name="Allison"/> of soft parts have an unsurpassed degree of preservation, with detailed cellular structure. [[Muscle]] fibers are most often preserved through phosphate replacement. Normally carbonate ion [[concentration]]s are higher than phosphates in both fresh and marine waters, and so carbonate replacement is preferred. For phosphatization to occur, organic content of the water must be high, coupled with a low rate of burial.


=== Pyritization ===
=== Pyritization ===
Pyritization often happens in conjunction with permineralization and replacement, as does silification.<ref name="Martin">.</ref>
Pyritization often happens in conjunction with permineralization and replacement, as does silification.<ref name="Martin"/> It requires an availability of dissolved iron.<ref name="Allison & Briggs"/> Soft tissue can be preserved by pyrite in three ways: permineralization, mineral coating or pseudomorphs, and mineral casts or moulds.<ref name="Allison"/> Although both mineral coating and casts preserve only surface detail, that of coating is far more detailed. Pyritized soft tissue is very rare.<ref name="Allison"/>
It requires an availability of iron oxide.<ref name="Allison & Briggs">.</ref>
Soft tissue can be preserved by pyrite in three ways: permineralization, mineral coating or pseudomorphs, and mineral casts or moulds.<ref name="Allison">.</ref>
Although both mineral coating and casts preserve only surface detail, that of coating is far more detailed. Pyritized soft tissue is very rare.<ref name="Allison">.</ref>


=== Carbonate preservation===
Carbonate preservation <ref name="Allison & Briggs"/> is influenced by predation, water chemistry, shell morphology and mineralogy, and shell dissolution kinetics. Surrounding water must be saturated with carbonates in order to avoid dissolution of carbonate skeletal remains. Ideal conditions for carbonate preservation are normally found in marine shelf sediments, with a high biomass of organisms that could potentially fossilize. In fresh water, concentrations of calcium carbonate vary considerably, and so preservation in these environments is not as predictable. Carbonate preservation in freshwaters may be referred to as a transient state, because even minor changes in water chemistry, temperature, or pressure may be sufficient to destroy all preservation present at that time. Consequently, it may seem astonishing that carbonate preservation occurs at all. There are three mitigating factors: carbonate dissolution occurs much quicker than replacement by other minerals, fine-grained sediments will protect the process from ''ex situ'' fluctuations, and cementation of the sediment enhances preservation.
On the contrary, normal marine waters are constantly supersaturated with respect to calcium carbonate, and the preservation of carbonate shells is a rather common instance.


=== Carbonate preservation<ref name="Allison & Briggs">.</ref> ===
=== Charcoalification===
Carbonate preservation is influenced by predation, water chemistry, shell morphology and mineralogy, and shell dissolution kinetics. Surrounding water must be saturated with carbonates in order to avoid dissolution of carbonate skeletal remains. Ideal conditions for carbonate preservation are normally found in organic-rich shelf sediments. In fresh water, concentrations of calcium carbonate vary considerably, and so preservation in these environments is not as predictable. Carbonate preservation may be referred to as a transient state, because even minor changes in water chemistry, temperature, or pressure may be sufficient to destroy all preservation present at that time. Consequently, it may seem astonishing that carbonate preservation occurs at all. There are three mitigating factors: carbonate dissolution occurs much quicker than replacement by other minerals, fine-grained sediments will protect the process from ex situ fluctuations, and cementation of the sediment enhances preservation. Sulfate reduction is required for cementation to occur.
Charcoalification <ref name="Allison & Briggs"/> can preserve tissues burned in wildfires or buried in [[pyroclastic flows]]. Internal structure is often detailed. Even though charcoal is soft, it is easily transported because of its lightness, which may explain its survival to present-day.
 
 
=== Charcoalification<ref name="Allison & Briggs">.</ref> ===
Charcoalification can preserve tissues burned in wildfires or buried in pyroclastic flows. Internal structure is often detailed. Even though charcoal is soft, it is easily transported because of its lightness, which may explain why its survival to present-day.
 


== The fate of biomolecules during fossilization ==
== The fate of biomolecules during fossilization ==
The field of molecular palaeontology is new, but can provide important information about diagenetic processes, and allow us to identify stratigraphic biomarkers.<ref name="Allison & Briggs">.</ref>
The field of molecular palaeontology is new, but can provide important information about diagenetic processes, and allow us to identify stratigraphic biomarkers.<ref name="Allison & Briggs"/> Molecules can also be diagnostic of certain taxonomic groups. Nucleic acids and proteins are the most subject to decay, while lipids, resin, lignin and cutan are highly resistant. However, [[polymerase chain reaction (PCR)]] has now allowed [[DNA]] and [[RNA]] to be recovered from some fossils, although it would never be stable enough to [[clone]] extinct organisms.<ref name="Allison & Briggs"/>
Molecules can also be diagnostic of certain taxonomic groups. Nucleic acids and proteins are the most subject to decay, whilst lipids, resin, lignin and cutan are highly resistant. However, polymerase chain reaction (PCR) has now allowed DNA and RNA to be recovered from some fossils, although it would never be stable enough to clone extinct organisms.<ref name="Allison & Briggs">.</ref>
 


== Fossilization in different organisms ==
== Fossilization in different organisms ==
Because biomolecules are affected differently during the decay process, the makeup of organisms influences their potential to become fossilized. Organisms composed largely of unstable elements such as fat and muscle are less likely to enter the fossil record then organisms with a substantial component of stable tissue like bone or shell.<ref name="MacRae">.</ref>
Because biomolecules are affected differently during the decay process, the makeup of organisms influences their potential to become fossilized. Organisms composed largely of unstable elements such as fat and muscle are much less likely to enter the fossil record then organisms with a substantial component of stable tissue like bone or shell.<ref name="MacRae"/> Animals like jellyfish, composed entirely of soft tissue, rarely fossilize, but impressions, another kind of fossil, are evident in ocean floor sediments and confirm their existence. It is practical to group organisms according to how they fossilize. Soft-bodied invertebrates, shelled organisms, plants and vertebrates all have distinctive reactions to taphonomic processes.<ref name="Allison & Briggs"/>
Animals like jellyfish, composed entirely of soft tissue, rarely fossilize, but impressions, another kind of fossil, are evident in ocean floor sediments and confirm their existence. It is practical to group organisms according to how they fossilize. Soft-bodied invertebrates, shelled organisms, plants and vertebrates all have distinctive reactions to taphonomic processes.<ref name="Allison & Briggs">.</ref>
 


=== Soft tissue preservation ===
=== Soft tissue preservation ===
Because soft tissue is so nutritious for predators, scavengers and microbes, its fossilization is quite rare compared to that of hard parts. Preservation of soft tissue can also influence that of skeletal elements, by keeping them articulated.<ref name="Allison & Briggs">.</ref>
Because soft tissue is so nutritious for predators, scavengers and microbes, its fossilization is very rare compared to that of hard parts. Preservation of soft tissue can also influence that of skeletal elements, by keeping them articulated.<ref name="Allison & Briggs"/> Rapid burial is not usually important in soft body fossilization.<ref name="Allison"/> Cyanobacteria and other microbia are instrumental in preserving soft organisms by means of microbial films.<ref name="Seilacher">Seilacher, A., Reif, W.-E. & Westphal, F. 1985. Sedimentological ecological and temporal patterns of fossil Lagerstätten. In: H.B. Whittington and S. Conway Morris (eds.) Extraordinary fossil biota: their ecological and evolutionary significance. ''Philosophical Transactions of the Royal Society of London'' (B) '''311''': 5-23.</ref>
Rapid burial is not usually important in soft body fossilization.<ref name="Allison">.</ref>
Cyanobacteria and other microbia are instrumental in preserving soft organisms by means of microbial films.<ref name="Seilacher">.< Seilacher, A., Reif, W.-E. & Westphal, F. 1985. Sedimentological ecological and temporal patterns of fossil Lagerstätten. In: H.B. Whittington and S. Conway Morris (eds.) Extraordinary fossil biota: their ecological and evolutionary significance. ‘’Philosophical Transactions of the Royal Society of London’’ (B) ‘’’311’’’: 5-23.</ref>


=== Plant fossilization ===
When plants are fossilized, they are normally not found intact. Various structures of a plant are inclined to fall off during its lifetime, creating separate fossils of the different parts.<ref name="McCarthy & Rubidge"/> Leaves and fruits are shed, and pollen can disperse far away from the original plant. Unless these structures are found together on the same plant, they are given different names, as it cannot be certain they are the same taxon.<ref name="McCarthy & Rubidge"/>
{{Image|Sphenophyte - McCarthy & Rubidge.jpg|right|300px|Fossilized sphenophytes belonging to the glossopterid flora.}}


=== Plant fossilization ===
Most plants are preserved as compressions or impressions, and often coated with minerals like iron oxide.<ref name="Allison & Briggs"/> Impression fossils are created when the groundwater is alkaline and oxygen is present. All the plant material is destroyed, but a highly detailed impression remains if the surrounding sediment was fine-grained.<ref name="MacRae"/> Compression is a special case of carbonization. For a compression, ground water must be acidic, with no oxygen present, to ensure preservation. After burial, the soft and thin-walled tissue of leaves decays quickly, but the outer cuticle remains.<ref name="MacRae"/> Successive layers of sediment cover plant material, increasing temperature and pressure. This drives off the unstable components of the remaining organic molecules, carbonising the material, which appears as a black film of coal.<ref name="MacRae"/> Pollen and spores are very small and easily trapped in sediments.<ref name="McCarthy & Rubidge"/> They also require acidic, anoxic conditions for preservation, and have an outer protective layer of exine resistant to acid. Petrified wood forms when tree trunks were submerged in waters rich in minerals.<ref name="McCarthy & Rubidge"/> Over time, these minerals replaced the organic matter, maintaining the internal cellular structure as well as the external morphology. Silicification, pyritization and carbonate mineralization are common among plant fossils, particularly in wood.<ref name="Allison & Briggs"/>
When plants are fossilized, they are normally not found intact. Various structures of a plant are inclined to fall off during its lifetime, creating separate fossils of the different parts.<ref name="McCarthy & Rubidge">.</ref>
{{Image|Dicrodium leaf cuticle - MacRae.jpg|left|250px|Microscopic view of the leaf cuticle of ''Dicrodium zuberi'' with stomata visible.}}
Leaves and fruits are shed, and pollen can disperse far away from the original plant. Unless these structures are found together on the same plant, they are given different names, as it cannot be certain they are the same taxon.<ref name="McCarthy & Rubidge">.</ref>
Most plants are preserved as compressions or impressions, and often coated with minerals like iron oxide.<ref name="Allison & Briggs">.</ref>
Impression fossils are created when the groundwater is alkaline and oxygen is present. All the plant material is destroyed, but a highly detailed impression remains if the surrounding sediment was fine-grained.<ref name="MacRae">.</ref>
For a compression, ground water must be acidic, with no oxygen present, to ensure preservation. After burial, the soft and thin-walled tissue of leaves decays quickly, but the outer cuticle remains.<ref name="MacRae">.</ref>
Successive layers of sediment cover plant material, increasing temperature and pressure. This drives off the unstable components of the remaining organic molecules, carbonising the material, which appears as a coal-like black film.<ref name="MacRae">.</ref>
Pollen and spores are very small and easily trapped in sediments.<ref name="McCarthy & Rubidge">.</ref>
They also require acidic, anoxic conditions for preservation, and have an outer protective layer of exine resistant to acid.
Petrified wood forms when tree trunks were submerged in waters rich in minerals.<ref name="McCarthy & Rubidge">.</ref>
Over time, these minerals replaced the organic matter, maintaining the internal cellular structure as well as the external morphology. Both pyritization and carbonate mineralization are common among plant fossils, particularly in wood.<ref name="Allison & Briggs">.</ref>


=== Hard tissue fossilization ===
=== Hard tissue fossilization ===
Weakly acidic water will often dissolve a shell completely. If the sediment surrounding the shell has already been consolidated, the surface details of the shell will be imprinted on the rock, forming a mould. The relief of the mould is opposite to that of the original shell.<ref name="MacRae">.</ref>
Carbonate shells and tests of marine organisms as [[mollusc]]s, [[brachiopod]]s, [[echinoderm]]s, [[foraminifer]]s are, by far, the most common fossils, thanks to their resistance to taphonomic and diagenetic alteration. Nevertheless, weakly acidic water often dissolve a shell completely. If the sediment surrounding the shell has already been consolidated, the surface details of the shell will be imprinted on the rock, forming internal and external molds. The relief of the mold is opposite to that of the original shell.<ref name="MacRae"/> When the sediment is partially unconsolidated when the shell dissolves, the sculptures of the external and internal sides overlap, and results in a composite mould. Shells often undergo recrystallization, where the composition remains unaltered, but the crystal structure is changed. Calcium carbonate crystals become coarser and larger, and the original microstructure is not preserved.<ref name="MacRae"/> The most common vertebrate fossils are bones and teeth.<ref name="Shipman"/> Both the structure of the skeletal element, and the taphonomic processes which it is subjected to, affect its chances of passing into the fossil record. This is termed the ''preservation potential''.
Shells often undergo recrystallization, where the composition remains unaltered, but the crystal structure is changed. Calcium carbonate crystals become coarser and larger, and the original microstructure is not preserved.<ref name="MacRae">.</ref>
The most common fossils are bones and teeth.<ref name="Shipman">.</ref>
Both the structure of the skeletal element, and the taphonomic processes which it is subjected to, affect its chances of passing into the fossil record. This is termed the preservation potential.


== Preservation potential ==
== Preservation potential==
Preservation potential is primarily determined by the bone itself, rather than by what happens to it.<ref name="Shipman">.</ref>
The concept of preservation potential can be explained with the example of vertebrate bones.
A bone’s size, shape, how it weathers, and breaks when chewed are all a result of its structural properties. Small bones, bones with a high marrow content, cancellous bone, and bones intimately associated with soft tissue (e.g. ribs) have the lowest preservation potential.<ref name="Shipman">.</ref>
This can create a biased taphonomic assemblage. For example, an assemblage consisting only of large-boned, savanna animals does not necessarily indicate a savanna environment. Smaller-boned forest animals are much less likely to be preserved, but they could have been present in life.<ref name="Shipman">.</ref>


Preservation potential <ref name="Shipman"/> is primarily determined by the bone itself, rather than by what happens to it. A bone’s size, shape, how it weathers, and breaks when chewed are all a result of its structural properties. Small bones, bones with a high marrow content, cancellous bone, and bones intimately associated with soft tissue (e.g. ribs) have the lowest preservation potential. This can create a biased taphonomic assemblage. For example, an assemblage consisting only of large-boned, [[savanna]] animals does not necessarily indicate a savanna environment. Smaller-boned forest animals are much less likely to be preserved, but they could have been present in life.
{{Image|Little Foot in breccia - McCarthy & Rubidge.jpg|left|400px|Little Foot is a specimen of Australopithecus from Sterkfontein in the Cradle of Humankind. The skeleton is encased in breccia, which formed in the limestone caves. Image A shows the skull and Image B, the post-cranial skeleton.}}


Taphonomic processes are also important in determining whether an animal will enter the fossil record. The cause of death, in particular, directly impacts upon an animal’s chance of fossilization.<ref name="Shipman">.</ref>
Taphonomic processes are also important in determining whether an animal will enter the fossil record. The cause of death, in particular, directly impacts upon an animal’s chance of fossilization.
If an animal is predated upon, at least some of the carcass will be eaten, reducing its chance of being preserved. However, some predators are less destructive than others when it comes to feeding. The fact that some fossils have been found with tooth marks means that it is possible for a predated animal to enter the fossil record.<ref name="Shipman">.</ref>
If an animal is predated upon, at least some of the carcass will be eaten, reducing its chance of being preserved. However, some [[predator]]s are less destructive than others when it comes to feeding. The fact that some fossils have been found with tooth marks means that it is possible for a predated animal to enter the fossil record.<ref name="Shipman"/> [[Disease]] as a cause of death has little impact on the likelihood of fossilization. Dying of old age may mean that the animal’s bones have lost minerals with age, but this could be offset that they have grown to a larger size. Larger bones are more likely to withstand destructive agents. Accidental deaths are frequently excellent for preservation. Many an animal has been trapped in [[tar pit]]s, soft mud or [[volcano|volcanic]] [[lava]], all of which ensure rapid burial. Falling into a cave would ensure the skeleton is kept together, and protect it from predation if the cave was inaccessible. In limestone caves, bones may be lithified into [[breccia]]s, such as at the [[Cradle of Humankind]].  
Disease as a cause of death has little impact on the likelihood of fossilization. Dying of old age may mean that the animal’s bones have lost minerals with age, but this could be offset that they have grown to a larger size. Larger bones are more likely to withstand destructive agents.<ref name="Shipman">.</ref>
Accidental deaths are frequently excellent for preservation. Many an animal has been trapped in tar pits, soft mud or volcanic lava, all of which ensure rapid burial. Falling into a cave would ensure the skeleton is kept together, and protect it from predation if the cave was inaccessible.<ref name="Shipman">.</ref>
In limestone caves, bones are lithified into breccia, such as at the Cradle of Humankind. If animals die of starvation or dehydration, a drought was likely to be the cause. During drought conditions, animals refuse to leave a water source even if no forage is left.<ref name="Shipman">.</ref>
The simultaneous death of numerous animals near a water source is extremely likely to pass into the fossil record. Firstly, when the drought ends, water levels will rise again and could bury the carcasses. Secondly, the surplus of food for predators means that not all the animals would be consumed.<ref name="Shipman">.</ref>


If animals die of starvation or dehydration, a [[drought]] was likely to be the cause. During drought conditions, animals refuse to leave a water source even if no forage is left. The simultaneous death of numerous animals near a water source is extremely likely to pass into the fossil record. Firstly, when the drought ends, water levels will rise again and could bury the carcasses. Secondly, the surplus of food for predators means that not all the animals would be consumed.


== Extraordinary instances of preservation ==
== Extraordinary instances of preservation ==
In unusual circumstances, more than just the bare bones of an organism may be preserved. Whole frozen mammoths have been retrieved from permafrost in Siberia, with skin and hair intact.<ref name="Stewart">.< Stewart, J.M. 1977. Frozen mammoths from Siberia bring the Ice Ages to vivid life. ‘’Smithsonian Magazine’’, Dec.: 60-69.</ref>
In unusual circumstances, more than just the hard parts of an organism may be preserved.
Permafrost has preserved the mammoths so well that their flesh is judged edible.<ref name="Stewart">.</ref>
Arid climates can sometimes naturally mummify animals, preserving skin and bone, in the same manner as mummification practised by the Egyptians.<ref name="McCarthy & Rubidge">.</ref>
Amber has been made famous for its preservation properties in the movie ‘’Jurassic Park’’. Amber forms when plant resin is exposed to the air, causing its constituent molecules (terpenes) to cross-link and harden.<ref name="Martin">.</ref>
The substance is very resistant to decay, with the oldest amber found dating to the Late Carboniferous (290 Ma). Amber younger than 40 000 years is termed “sub-fossil resin”.<ref name=" Stankiewicz ">.< Stankiewicz, B.A., Poinar, H.N., Briggs, D.E.G., Evershed, R.P. & Poinar, G.O.1998. Chemical Preservation of Plants and Insects in Natural Resins. ‘’Proceedings: Biological Sciences’’ ‘’’265’’’(1397): 641-647.</ref>
Ambers from different localities can be recognised by their chemical make-up, and also distinguished by spectroscopy.<ref name="Grimaldi">.< Grimaldi, D. 1996. Amber: Window to the Past. New York: Abrams.</ref>
This is highly useful if the amber has plants or animals trapped inside. Organisms are 3-dimensional with excellent morphological preservation, but their internal structure is dissolved.<ref name="Stankiewicz">.</ref>
Peat bogs have yielded the famous “Bog People” – two thousand year old humans with intact skin, hair and clothing due to the presence of anti-bacterial tannic and fulvic acids .<ref name="Allison">.</ref>
Because of the low pH, their bones have been dissolved.<ref name="Shipman">.</ref>
There are some extraordinary instances of preservation called Lagerstätten, and can either be concentration deposits (mainly hard parts like shell and bone), or conservation deposits, which have preserved soft-bodied organisms.<ref name="Martin">.</ref>
The Grube Messel in Germany was a shallow but highly anoxic lake, deposited during the Middle Eocene.<ref name="Franzen">.< Franzen, J.L. 1985. Exceptional Preservation of Eocene Vertebrates in the Lake Deposit of Grube Messel (West Germany). ‘’Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences’’ ‘’’311’’’(1148): 181-186.</ref>
Algal decay and plankton blooms were responsible for the anoxic conditions, resulting in excellent preservation of many birds and bats, which normally don’t fossilize well because of their fragile skeletons. Diatoms, pollen, insects, and all classes of vertebrates have also been found, most articulated.<ref name="Franzen">.</ref>
Outlines of bodies as well as digestive contents are sometimes visible.
 
 
The Rhynie Chert is an ancient hot spring in Scotland, dating to the Early Devonian. Rapid silification occurs in hot spring sites, so they are excellent for fossil finds.<ref name="Trewin">.< Trewin, N.H. 1989. The Rhynie hot-spring deposit. ‘’Earth Science Conservation’’ ‘’’26’’’: 10-12.</ref>
The Rhynie hot spring is highly significant because the earliest terrestrial communities were forming during this time.<ref name="Trewin">.</ref>
Flooding of the spring periodically captured the structure of the community, which included the plant Rhynia, algae, and various arthropods.
 
 
== Summary ==
Understanding the process of fossilization, and the different means through which it can occur, is crucial to comprehending the fossils being studied. The fossils we find today are not a representative sample of past life. Certain organisms, and particular elements of those organisms, are more likely to be preserved than others. Taphonomy is the study of what has happened to an organism from the moment of death until it is found as a fossil.<ref name="Shipman">.</ref>
Exploring the process of fossilization from a taphonomic perspective allows us to place individual fossils into a wider context. Consequently, we can reconstruct not only their skeletal morphology, but hopefully their behaviour, life history and palaeoenvironment.   


* Whole frozen [[mammoths]] have been retrieved from [[permafrost]] in Siberia, with skin and hair intact.<ref name="Stewart">Stewart, J.M. 1977. Frozen mammoths from Siberia bring the Ice Ages to vivid life. ''Smithsonian Magazine'', Dec.: 60-69.</ref> Permafrost has preserved the mammoths so well that their flesh is judged edible.<ref name="Stewart"/>
* Arid climates can sometimes naturally mummify animals, preserving skin and bone, in the same manner as mummification practiced in [[Ancient Egypt]].<ref name="McCarthy & Rubidge"/>
* [[Amber]] has been made famous for its preservation properties in the movie ''Jurassic Park''. Amber forms when plant resin is exposed to the air, causing its constituent molecules ([[terpene]]s) to cross-link and harden.<ref name="Martin"/> The substance is very resistant to decay, with the oldest amber found dating to the Late [[Carboniferous]] (290 Ma). Amber younger than 40 000 years is termed “sub-fossil resin”.<ref name=" Stankiewicz ">Stankiewicz, B.A., Poinar, H.N., Briggs, D.E.G., Evershed, R.P. & Poinar, G.O.1998. Chemical Preservation of Plants and Insects in Natural Resins. ''Proceedings: Biological Sciences'' '''265'''(1397): 641-647.</ref> Ambers from different localities can be recognised by their chemical make-up, and also distinguished by [[spectroscopy]].<ref name="Grimaldi">Grimaldi, D. 1996. ''Amber: Window to the Past''. New York: Abrams.</ref> This is highly useful if the amber has plants or animals trapped inside. Organisms are 3-dimensional with excellent morphological preservation, but their internal structure is dissolved.<ref name="Stankiewicz"/>
* [[Peat]] bogs have yielded the famous “[[Bog People]]” – two thousand year old humans with intact skin, hair and clothing due to the presence of anti-bacterial tannic and fulvic acids.<ref name="Allison"/> Because of the low pH, their bones have been dissolved.<ref name="Shipman"/>


==See also==
There are some extraordinary instances of preservation called [[Fossil lagerstätten|Lagerstätten]], and can either be concentration deposits (mainly hard parts like shell and bone), or conservation deposits, which have preserved soft-bodied organisms.<ref name="Martin"/>
*[[Taphonomy]]
* The [[Grube Messel]] in Germany was a shallow but highly anoxic lake, deposited during the Middle [[Eocene]].<ref name="Franzen">Franzen, J.L. 1985. Exceptional Preservation of Eocene Vertebrates in the Lake Deposit of Grube Messel (West Germany). ''Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences'' '''311'''(1148): 181-186.</ref> Algal decay and plankton blooms were responsible for the anoxic conditions, resulting in excellent preservation of many birds and bats, which normally don’t fossilize well because of their fragile skeletons. Diatoms, pollen, insects, and all classes of vertebrates have also been found, most articulated.<ref name="Franzen"/> Outlines of bodies as well as digestive contents are sometimes visible.
 
* The [[Rhynie Chert]] is an ancient hot spring in Scotland, dating to the Early [[Devonian]]. Rapid silification occurs in hot spring sites, so they are excellent for fossil finds.<ref name="Trewin">Trewin, N.H. 1989. The Rhynie hot-spring deposit. ''Earth Science Conservation'' '''26''': 10-12.</ref> The Rhynie hot spring is highly significant because the earliest terrestrial communities were forming during this time.<ref name="Trewin"/> Flooding of the spring periodically captured the structure of the community, which included the plant ''Rhynia'', algae, and various arthropods.
* The Middle [[Cambrian (geology)|Cambrian]] [[Burgess shale]], in the Canadian rocky mountains, is perhaps the most known fossil lagerstätten. Here, a variety of marine organisms are preserved with mineralized soft tissue. The majority of them belong to [[extinction|extinct]] taxa.<ref name="Gould90">Gould, S.J., 1990, Wonderful life: The Burgess Shale and the Nature of History. W.W. Norton, 352 pp., ISBN 039330700X</ref>
* The Upper [[Jurassic]] lagerstätten of [[Solnhofen]], Germany, was a marginal marine setting with anoxic sea bottom. The absence of oxygen and fine sediments allowed the fine preservation of delicate soft body parts. Its position close to the coast line implies that marine and continental organisms are found associated at Solnhofen. The site is famous for the finding of ''[[Archaeopteryx]]'', which is considered the oldest known bird. At least some of the specimens exhibit preserved feathers.


==References==
==References==
<references />
{{reflist|2}}[[Category:Suggestion Bot Tag]]
 
 
===External links===
*[ http://mansfield.osu.edu/~sabedon/biol1520.htm]
*[ http://en.wikipedia.org/wiki/Fossil]
*[ http://paleontology.esmartstudent.com/fossilization.html]
*[ http://home.tiac.net/~cri/1998/taphonomy.html]
 
[[User:Natasha Barbolini|Natasha Barbolini]] 14:06, 24 September 2007 (CDT)

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This article is about the process in palaeontology. For other uses of the term Fossilization, please see Fossilization (disambiguation).

Fossilization is the process that preserves evidence of life in earth's rock record. This evidence of past life is called a fossil. The word "fossil" is derived from the Latin fossilis, something dug up.[1] During the Middle Ages, the term "fossil" was used for any sample recovered from the earth, including rocks and minerals.[1] Today, the use of "fossil" is limited to the record of ancient life. Fossilization can preserve actual remnants of an organism, or evidence of their presence in an ecosystem.[1]

© Photo: Colin MacRae
Fossil of Mesosaurus tenuidens, a swimming reptile from the Whitehill Formation near Kimberley, South Africa.

Understanding the process of fossilization, and the different means through which it can occur, is used by taphonomists, paleontologists, and geologists to understand the lives of past organisms and the ancient environments in which they lived. The fossil record, however, is not a representative sample of past life, because certain organisms, and particular elements of those organisms, are more likely to be preserved than others. In addition certain environments are more suitable for fossilization than others, and some environments will yield no fossil remains through time.

Taphonomy is the study of what has happened to an organism from the moment of death until it is found as a fossil.[2] Exploring the process of fossilization from a taphonomic perspective allows placement of individual fossils into a wider context. Consequently, researchers reconstruct not only the morphology of organisms, but under the right conditions, their behavior, life history and palaeoenvironment as well.

Overview

Organisms pass through a number of stages on their way to becoming fossils.[3]

StageDefinition
Death Generally, this is the first stage in fossilization. Death can occur as a result of burial and in this case biostratinomic processes may not take place.
Biostratinomic processes Processes such as reorientation, disarticulation, fragmentation, and corrosion, which modify the remains. Not desirable, as information is lost.
Deposition Burial of the remains in sediment, where they are less likely to be disturbed.
Diagenetic processes Chemical / physical changes e.g. permineralization. Necessary for fossilization.

First, the organism must be deposited in sediment. Between the time of death and burial, biostratinomic processes alter the remains. Before burial, an organic skeleton is normally subject to reorientation, disarticulation, fragmentation, and corrosion. Once it is buried, it undergoes diagenetic processes. Diagenesis is simply any change, chemical or physical, which occurs in an organism after burial.[3] Such changes are necessary for preservation, because organic matter will not survive for long before it is decomposed, and even hard parts, as bones, teeth, calcified shells, are normally prone to destruction. A typical diagenetic process is mineralization, which can occur with various minerals such as pyrite, phosphates or the various forms of silica.[3]

Fossilization is not a process that only occurred millions of years ago. It has also occurred in the recent past, simply because the same geological processes that happened in the past are also taking place now. This is called the Principle of Uniformitarianism.[4] For example, Anna Behrensmeyer reported bones in all stages of fossilization, from organic to completely mineralized, in the Amboseli Basin of East Africa.[5] Bones are dated from the Holocene to the Pleistocene, negating the claim made by some that no instances of fossilization are apparent today.

© Photo: Colin MacRae
Fossilized bird nest from a Cape Town wetland. Because it was only fossilized recently, it is termed a "sub-fossil".

“Post-mortem modification is a virtually unavoidable fact of fossilization”.[6] Older fossils are more likely to have been modified by diagenetic processes, and thus, to be a less accurate copy of the original.[6] Analysis of modes of fossilization in an assemblage can reveal whether that assemblage represents input from more than one source.[7]

Fossilization of organic tissues

There are five general types of fossilization:[6]

  • carbonized soft tissue
  • diagenetically mineralized three-dimensional tissue
  • tissue outlines
  • carbonized refractory tissue
  • originally mineralized tissue, i.e., shell and bone.

Carbonization is a process occurring within the sediment in the absence of oxygen. In such conditions, anaerobic bacteria consume hydrogen and oxygen, therefore concentrating carbon. As long as the sediment or rock is kept in anoxic environments, the carbon, which is residual organic tissue, is preserved, but carbonized soft tissue is only preserved as a thin film. The final products of carbonization are coal and hydrocarbons, which can be considered accumulations of very badly preserved fossils.

Permineralization and petrification are processes leading to the preservation of tissues in three dimensions. They are common, for example, in bones which have a high porosity and are filled with marrow. If bones become buried when an animal dies, ground water can permeate. Carbonate minerals such as calcite, or silica, precipitate out of solution and solidify the organic material, accurately preserving the internal cellular structure. This is the process of permineralization, and has occurred in most older fossils.[1] In permineralization, the cell pores are packed with minerals, while the walls remain highly organic.[6] Replacement happens when minerals replace the organic matter completely. The mineral replacement of shell or bone is also called petrification, because it turns organic material into stone.[4] When a fossil is petrified, both the cell walls and voids are mineralized.[6] Another example of petrification is silicified wood. Around 20 different minerals have been found to replace fossils. Chalcedony, pyrite and iron oxide are common in replacement.[1]

An organism can leave a mold behind when it decays, preserving surface details in the surrounding sediment. If the mold later fills with sediment, a replica of the organism is created, called a natural cast. A natural cast does not preserve the internal or cellular structure of the original organism, but only its surface detail.[1] The term cast is also used to indicate three-dimensional copies of a fossil, made out of plaster and resin. These casts are useful for teaching purposes, or when the original fossil is fragile or damaged. However, these laboratory casts are created in a similar way to a natural cast, by using a mold. The endocranial cast of the Taung child was formed naturally by the accumulation of lime inside the skull, and preseves the sutures of the brain on its surface.

© Photo: Colin MacRae
Partial skull and endocranial cast of the Taung Child, holotype of Australopithecus africanus.

Carbonized refractory tissue is, e.g., charcoal.

Finally, some hard tissues, as bone or shell, may resist diagenesis and preserve substantially unmodified. This is relatively common for Quaternary fossils, but becomes an exceptionally rare instance for Tertiary or older fossils.

Trace fossils are not remnants of an organism itself, but some record of its behaviour. Tracks, burrows, coprolites (fossil feces), and stone tools are all examples of trace fossils. The study of fossil traces is a special branch of paleontology, called ichnology.

Conditions for preservation

Fossils represent a very small proportion of all the organisms which have ever lived. This is because fossils only form under specific conditions. Decomposition is a requirement for environments to function, and so fossilization represents a deviation from this natural process.[1]

Destructive agents which aid decomposition include predators and scavengers, transport by wind and water, weathering by changes in temperature, wind, rain and chemicals, and decay by microbes, insects and roots.[2] Various agents can be responsible for the preservation of organisms. Commonly, sediments bury the remains and keep them from being disturbed during the process of fossilization. More unusual agents include lava or volcanic ash, and severe cold or aridity.[2] Temperatures below 4°C (39.2ºF) inhibit bacterial activity and thus, decay of organic matter.[6]

Generally, the following circumstances are favorable for fossilization:

  • The organism should be rapidly buried to avoid damage by scavengers or weathering agents like water, wind and fluctuations in temperatures.[4] Thus, fossilization is much more common in marine environments, which are characterized preferentially by sediment deposition rather than erosion. In continental environments, fossils are most common in fluvial sediments, and rare in soils.[2] The remains require little or no disturbance during the fossilization process.
  • The organism should be buried in anaerobic conditions, because oxygen encourages the presence of bacteria which decompose organic material.[4] Examples of continental anaerobic environments include wet areas like swamps and floodplains. However, decay can occur under anoxic conditions, for example by bacterial sulfate reduction.[8] Anoxia also creates reducing conditions, forming reactive ionic species. This encourages mineral precipitation.[8]
  • Containing some hard parts increases the likelihood that an organism will be preserved, but it is not necessary for fossilization.[9] Although multicellular life was already diversifying well before the Cambrian period, an extensive record of pre-Cambrian life forms does not exist.[4] It was only during the Cambrian Explosion of life that many forms began simultaneously covering themselves with a hard exterior. This hard surface developed as protection against predation, but also happened to be conducive to fossilization.[4]
© Photo: Mike Raath
Archaeopteryx is a small and gracile forest animal, with a lower likelihood of preservation.

Because of the specific conditions needed for a fossil to be created, organisms that do not live in environments favorable to preservation are likely never to appear in the fossil record. Small, gracile animals are normally too delicate to withstand the ravages of time, as are animals living in a high-acidic environment like a tropical forest.[10] Most depositional environments are marine, while terrestrial environments tend to be erosional. Thus, a much better fossil record exists for marine organisms than for terrestrial life.[1]

Diagenetic processes

Silification

Silica, and especially its most common crystallized form (the mineral quartz), is extremely stable at the Earth’s surface, therefore silicified fossils are likely to withstand modification or damage.[6] Silification occurs mainly in plants, while in soft organisms it is very rare.[8] When plant matter is silicified, this is an example of permineralization and not replacement.[11] There are four variations on silification replacement: mosaic quartz, spherulitic chalcedony, lutecite and microgranular quartz.[6] Leo & Barghoon proposed that partial decay is necessary for silification, although it may be only on the molecular level.[11]

© Photo: Colin MacRae
Permineralization of fossil wood Auracaryoxylon sp., with internal cellular structure preserved. This is as a result of silica entering the cell voids.

Phosphatization

Phosphatization [8] of soft parts have an unsurpassed degree of preservation, with detailed cellular structure. Muscle fibers are most often preserved through phosphate replacement. Normally carbonate ion concentrations are higher than phosphates in both fresh and marine waters, and so carbonate replacement is preferred. For phosphatization to occur, organic content of the water must be high, coupled with a low rate of burial.

Pyritization

Pyritization often happens in conjunction with permineralization and replacement, as does silification.[9] It requires an availability of dissolved iron.[6] Soft tissue can be preserved by pyrite in three ways: permineralization, mineral coating or pseudomorphs, and mineral casts or moulds.[8] Although both mineral coating and casts preserve only surface detail, that of coating is far more detailed. Pyritized soft tissue is very rare.[8]

Carbonate preservation

Carbonate preservation [6] is influenced by predation, water chemistry, shell morphology and mineralogy, and shell dissolution kinetics. Surrounding water must be saturated with carbonates in order to avoid dissolution of carbonate skeletal remains. Ideal conditions for carbonate preservation are normally found in marine shelf sediments, with a high biomass of organisms that could potentially fossilize. In fresh water, concentrations of calcium carbonate vary considerably, and so preservation in these environments is not as predictable. Carbonate preservation in freshwaters may be referred to as a transient state, because even minor changes in water chemistry, temperature, or pressure may be sufficient to destroy all preservation present at that time. Consequently, it may seem astonishing that carbonate preservation occurs at all. There are three mitigating factors: carbonate dissolution occurs much quicker than replacement by other minerals, fine-grained sediments will protect the process from ex situ fluctuations, and cementation of the sediment enhances preservation. On the contrary, normal marine waters are constantly supersaturated with respect to calcium carbonate, and the preservation of carbonate shells is a rather common instance.

Charcoalification

Charcoalification [6] can preserve tissues burned in wildfires or buried in pyroclastic flows. Internal structure is often detailed. Even though charcoal is soft, it is easily transported because of its lightness, which may explain its survival to present-day.

The fate of biomolecules during fossilization

The field of molecular palaeontology is new, but can provide important information about diagenetic processes, and allow us to identify stratigraphic biomarkers.[6] Molecules can also be diagnostic of certain taxonomic groups. Nucleic acids and proteins are the most subject to decay, while lipids, resin, lignin and cutan are highly resistant. However, polymerase chain reaction (PCR) has now allowed DNA and RNA to be recovered from some fossils, although it would never be stable enough to clone extinct organisms.[6]

Fossilization in different organisms

Because biomolecules are affected differently during the decay process, the makeup of organisms influences their potential to become fossilized. Organisms composed largely of unstable elements such as fat and muscle are much less likely to enter the fossil record then organisms with a substantial component of stable tissue like bone or shell.[1] Animals like jellyfish, composed entirely of soft tissue, rarely fossilize, but impressions, another kind of fossil, are evident in ocean floor sediments and confirm their existence. It is practical to group organisms according to how they fossilize. Soft-bodied invertebrates, shelled organisms, plants and vertebrates all have distinctive reactions to taphonomic processes.[6]

Soft tissue preservation

Because soft tissue is so nutritious for predators, scavengers and microbes, its fossilization is very rare compared to that of hard parts. Preservation of soft tissue can also influence that of skeletal elements, by keeping them articulated.[6] Rapid burial is not usually important in soft body fossilization.[8] Cyanobacteria and other microbia are instrumental in preserving soft organisms by means of microbial films.[12]

Plant fossilization

When plants are fossilized, they are normally not found intact. Various structures of a plant are inclined to fall off during its lifetime, creating separate fossils of the different parts.[4] Leaves and fruits are shed, and pollen can disperse far away from the original plant. Unless these structures are found together on the same plant, they are given different names, as it cannot be certain they are the same taxon.[4]

© Photo: Marion Bamford
Fossilized sphenophytes belonging to the glossopterid flora.

Most plants are preserved as compressions or impressions, and often coated with minerals like iron oxide.[6] Impression fossils are created when the groundwater is alkaline and oxygen is present. All the plant material is destroyed, but a highly detailed impression remains if the surrounding sediment was fine-grained.[1] Compression is a special case of carbonization. For a compression, ground water must be acidic, with no oxygen present, to ensure preservation. After burial, the soft and thin-walled tissue of leaves decays quickly, but the outer cuticle remains.[1] Successive layers of sediment cover plant material, increasing temperature and pressure. This drives off the unstable components of the remaining organic molecules, carbonising the material, which appears as a black film of coal.[1] Pollen and spores are very small and easily trapped in sediments.[4] They also require acidic, anoxic conditions for preservation, and have an outer protective layer of exine resistant to acid. Petrified wood forms when tree trunks were submerged in waters rich in minerals.[4] Over time, these minerals replaced the organic matter, maintaining the internal cellular structure as well as the external morphology. Silicification, pyritization and carbonate mineralization are common among plant fossils, particularly in wood.[6]

© Photo: H.M. Anderson / Colin MacRae
Microscopic view of the leaf cuticle of Dicrodium zuberi with stomata visible.

Hard tissue fossilization

Carbonate shells and tests of marine organisms as molluscs, brachiopods, echinoderms, foraminifers are, by far, the most common fossils, thanks to their resistance to taphonomic and diagenetic alteration. Nevertheless, weakly acidic water often dissolve a shell completely. If the sediment surrounding the shell has already been consolidated, the surface details of the shell will be imprinted on the rock, forming internal and external molds. The relief of the mold is opposite to that of the original shell.[1] When the sediment is partially unconsolidated when the shell dissolves, the sculptures of the external and internal sides overlap, and results in a composite mould. Shells often undergo recrystallization, where the composition remains unaltered, but the crystal structure is changed. Calcium carbonate crystals become coarser and larger, and the original microstructure is not preserved.[1] The most common vertebrate fossils are bones and teeth.[2] Both the structure of the skeletal element, and the taphonomic processes which it is subjected to, affect its chances of passing into the fossil record. This is termed the preservation potential.

Preservation potential

The concept of preservation potential can be explained with the example of vertebrate bones.

Preservation potential [2] is primarily determined by the bone itself, rather than by what happens to it. A bone’s size, shape, how it weathers, and breaks when chewed are all a result of its structural properties. Small bones, bones with a high marrow content, cancellous bone, and bones intimately associated with soft tissue (e.g. ribs) have the lowest preservation potential. This can create a biased taphonomic assemblage. For example, an assemblage consisting only of large-boned, savanna animals does not necessarily indicate a savanna environment. Smaller-boned forest animals are much less likely to be preserved, but they could have been present in life.

© Photo: Amanda Esterhuysen
Little Foot is a specimen of Australopithecus from Sterkfontein in the Cradle of Humankind. The skeleton is encased in breccia, which formed in the limestone caves. Image A shows the skull and Image B, the post-cranial skeleton.

Taphonomic processes are also important in determining whether an animal will enter the fossil record. The cause of death, in particular, directly impacts upon an animal’s chance of fossilization. If an animal is predated upon, at least some of the carcass will be eaten, reducing its chance of being preserved. However, some predators are less destructive than others when it comes to feeding. The fact that some fossils have been found with tooth marks means that it is possible for a predated animal to enter the fossil record.[2] Disease as a cause of death has little impact on the likelihood of fossilization. Dying of old age may mean that the animal’s bones have lost minerals with age, but this could be offset that they have grown to a larger size. Larger bones are more likely to withstand destructive agents. Accidental deaths are frequently excellent for preservation. Many an animal has been trapped in tar pits, soft mud or volcanic lava, all of which ensure rapid burial. Falling into a cave would ensure the skeleton is kept together, and protect it from predation if the cave was inaccessible. In limestone caves, bones may be lithified into breccias, such as at the Cradle of Humankind.

If animals die of starvation or dehydration, a drought was likely to be the cause. During drought conditions, animals refuse to leave a water source even if no forage is left. The simultaneous death of numerous animals near a water source is extremely likely to pass into the fossil record. Firstly, when the drought ends, water levels will rise again and could bury the carcasses. Secondly, the surplus of food for predators means that not all the animals would be consumed.

Extraordinary instances of preservation

In unusual circumstances, more than just the hard parts of an organism may be preserved.

  • Whole frozen mammoths have been retrieved from permafrost in Siberia, with skin and hair intact.[13] Permafrost has preserved the mammoths so well that their flesh is judged edible.[13]
  • Arid climates can sometimes naturally mummify animals, preserving skin and bone, in the same manner as mummification practiced in Ancient Egypt.[4]
  • Amber has been made famous for its preservation properties in the movie Jurassic Park. Amber forms when plant resin is exposed to the air, causing its constituent molecules (terpenes) to cross-link and harden.[9] The substance is very resistant to decay, with the oldest amber found dating to the Late Carboniferous (290 Ma). Amber younger than 40 000 years is termed “sub-fossil resin”.[14] Ambers from different localities can be recognised by their chemical make-up, and also distinguished by spectroscopy.[15] This is highly useful if the amber has plants or animals trapped inside. Organisms are 3-dimensional with excellent morphological preservation, but their internal structure is dissolved.[14]
  • Peat bogs have yielded the famous “Bog People” – two thousand year old humans with intact skin, hair and clothing due to the presence of anti-bacterial tannic and fulvic acids.[8] Because of the low pH, their bones have been dissolved.[2]

There are some extraordinary instances of preservation called Lagerstätten, and can either be concentration deposits (mainly hard parts like shell and bone), or conservation deposits, which have preserved soft-bodied organisms.[9]

  • The Grube Messel in Germany was a shallow but highly anoxic lake, deposited during the Middle Eocene.[16] Algal decay and plankton blooms were responsible for the anoxic conditions, resulting in excellent preservation of many birds and bats, which normally don’t fossilize well because of their fragile skeletons. Diatoms, pollen, insects, and all classes of vertebrates have also been found, most articulated.[16] Outlines of bodies as well as digestive contents are sometimes visible.
  • The Rhynie Chert is an ancient hot spring in Scotland, dating to the Early Devonian. Rapid silification occurs in hot spring sites, so they are excellent for fossil finds.[17] The Rhynie hot spring is highly significant because the earliest terrestrial communities were forming during this time.[17] Flooding of the spring periodically captured the structure of the community, which included the plant Rhynia, algae, and various arthropods.
  • The Middle Cambrian Burgess shale, in the Canadian rocky mountains, is perhaps the most known fossil lagerstätten. Here, a variety of marine organisms are preserved with mineralized soft tissue. The majority of them belong to extinct taxa.[18]
  • The Upper Jurassic lagerstätten of Solnhofen, Germany, was a marginal marine setting with anoxic sea bottom. The absence of oxygen and fine sediments allowed the fine preservation of delicate soft body parts. Its position close to the coast line implies that marine and continental organisms are found associated at Solnhofen. The site is famous for the finding of Archaeopteryx, which is considered the oldest known bird. At least some of the specimens exhibit preserved feathers.

References

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 MacRae, C.S. 1999. Life Etched in Stone: Fossils of South Africa. The Geological Society of South Africa, Johannesburg.
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Shipman, P. 1981. Life History of a Fossil: An Introduction to Taphonomy and Paleoecology. Harvard University Press, England.
  3. ↑ 3.0 3.1 3.2 Brett, C.E. & Baird, G.C. 1986. Comparative Taphonomy: A Key to Paleoenvironmental Interpretation Based on Fossil Preservation. PALAIOS 1(3): 207-227.
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 McCarthy, T. & Rubidge, B. 2005. The Story of Earth and Life: A southern African perspective on a 4.6-billion-year journey. Struik Publishers, Cape Town.
  5. ↑ Behrensmeyer, A.K. 1991. Vertebrate Paleoecology in a Recent East African Ecosystem. In: Gray, J., Boucot, A.J. & Berry, W.B.N. (eds.), Communities of the Past, Stroudsburg: Hutchinson Ross Publishing Co.
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 Allison, P.A. & Briggs, D.E.G. 1991. Taphonomy: Releasing the Data Locked in the Fossil Record. Plenum Press, New York.
  7. ↑ Henderson, P., Pickford, M. & Williams, C.T. 1987. A geochemical study of rocks and spring waters at Kanam and Kanjera, Kenya, and the implications concerning element mobility and uptake. Journal of African Earth Sciences 6: 221-227.
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 Allison, P.A. 1988. Konservat-Lagerstätten: cause and classification. Paleobiology 14: 331-334.
  9. ↑ 9.0 9.1 9.2 9.3 Martin, R.E. 1999. Taphonomy: A Process Approach. Cambridge University Press.
  10. ↑ DiSilvestro, D.L. 1997. In Quest of the Origin of Birds. BioScience 47(8): 481-485.
  11. ↑ 11.0 11.1 Leo, R.F. & Barghoon, E.S. 1976. Silification of wood. Bot. Mus. Leaflets Harv. Univ.' 25: 1-47.
  12. ↑ Seilacher, A., Reif, W.-E. & Westphal, F. 1985. Sedimentological ecological and temporal patterns of fossil Lagerstätten. In: H.B. Whittington and S. Conway Morris (eds.) Extraordinary fossil biota: their ecological and evolutionary significance. Philosophical Transactions of the Royal Society of London (B) 311: 5-23.
  13. ↑ 13.0 13.1 Stewart, J.M. 1977. Frozen mammoths from Siberia bring the Ice Ages to vivid life. Smithsonian Magazine, Dec.: 60-69.
  14. ↑ 14.0 14.1 Stankiewicz, B.A., Poinar, H.N., Briggs, D.E.G., Evershed, R.P. & Poinar, G.O.1998. Chemical Preservation of Plants and Insects in Natural Resins. Proceedings: Biological Sciences 265(1397): 641-647.
  15. ↑ Grimaldi, D. 1996. Amber: Window to the Past. New York: Abrams.
  16. ↑ 16.0 16.1 Franzen, J.L. 1985. Exceptional Preservation of Eocene Vertebrates in the Lake Deposit of Grube Messel (West Germany). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 311(1148): 181-186.
  17. ↑ 17.0 17.1 Trewin, N.H. 1989. The Rhynie hot-spring deposit. Earth Science Conservation 26: 10-12.
  18. ↑ Gould, S.J., 1990, Wonderful life: The Burgess Shale and the Nature of History. W.W. Norton, 352 pp., ISBN 039330700X
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